X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1NZO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52940.2 M Sodium Nitrate, 0.1 M Bis-Tris propane, 20% PEG3350

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.749α = 90
b = 88.749β = 90
c = 85.425γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD3.0 Undulator2016-10-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.05301000.0660.9736.65.847191
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.091000.753.15.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1NZO2.053044920224699.940.193210.190860.23774RANDOM65.043
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.771.382.77-8.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.259
r_dihedral_angle_4_deg18.573
r_dihedral_angle_3_deg12.942
r_long_range_B_refined8.086
r_long_range_B_other8.086
r_scangle_other6.44
r_mcangle_it4.927
r_mcangle_other4.927
r_scbond_it4.789
r_scbond_other4.784
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.259
r_dihedral_angle_4_deg18.573
r_dihedral_angle_3_deg12.942
r_long_range_B_refined8.086
r_long_range_B_other8.086
r_scangle_other6.44
r_mcangle_it4.927
r_mcangle_other4.927
r_scbond_it4.789
r_scbond_other4.784
r_mcbond_it3.844
r_mcbond_other3.841
r_dihedral_angle_1_deg3.324
r_angle_refined_deg2.028
r_angle_other_deg0.993
r_chiral_restr0.132
r_gen_planes_refined0.027
r_gen_planes_other0.021
r_bond_refined_d0.018
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5772
Nucleic Acid Atoms
Solvent Atoms81
Heterogen Atoms43

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
BALBESphasing