5TN0

Solution Structure of the N-terminal DNA-binding domain of the master biofilm-regulator SinR from Bacillus subtilis


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
22D 1H-13C HSQC1 mM [U-13C; U-15N] SinRN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide100% D2O200 mM6.01 atm293Bruker AVANCE 700
33D HNCA1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
43D HN(CO)CA1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
53D HNCO1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
143D HN(CA)CO1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
133D HNCACB1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
123D CBCA(CO)NH1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
113D 1H-15N TOCSY1 mM [U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
103D C(CO)NH1 mM [U-13C; U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
93D 1H-15N NOESY1 mM [U-15N] SinrN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide90% H2O/10% D2O200 mM6.01 atm293Bruker AVANCE 700
83D 1H-13C NOESY1 mM [U-13C; U-15N] SinRN, 20 mM MES, 200 mM sodium chloride, 0.02 % sodium azide100% D2O200 mM6.01 atm293Bruker AVANCE 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRViewJohnson, One Moon Scientific
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingNMRViewJohnson, One Moon Scientific
4refinementAmber14Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman
5structure calculationCYANA3.0Guntert, Mumenthaler and Wuthrich