5TLQ

Model structure of the oxidized PaDsbA1 and 3-[(2-methylbenzyl)sulfanyl]-4H-1,2,4-triazol-4-amine complex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC0.3 mM [U-98% 13C; U-98% 15N] PaDsbA1, 3.3 mM 3-((2-methylbenzyl)thio)-4H-1,2,4-triazol-4-amine97.3%D2O+1.7%D6-DMSO50 mM NaCl and 50 mM sodium phosphate7.41 bar298Bruker AVANCE II 800
33D F1-13C,15N filtered F3-13Cedited [1H,1H]-NOESY0.3 mM [U-98% 13C; U-98% 15N] PaDsbA1, 3.3 mM 3-((2-methylbenzyl)thio)-4H-1,2,4-triazol-4-amine97.3%D2O+1.7%D6-DMSO50 mM NaCl and 50 mM sodium phosphate7.41 bar298Bruker AVANCE II 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II800
NMR Refinement
MethodDetailsSoftware
simulated annealing2MBT from the same group was used for HADDOCK model buildingHADDOCK
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpinBruker Biospin
2chemical shift assignmentCARAKeller and Wuthrich
3structure calculationHADDOCKBonvin
4peak pickingXEASYBartels et al.
5refinementHADDOCKBonvin