☰ Navigation Tabs
Naegleria fowleri CYP51-posaconazole complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X2N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 30% PEG MME 550, 30 mM CaCl2, 0.1 M Bis-Tris propane, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.03 α = 90 b = 55.04 β = 100.07 c = 71.62 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M MIRRORS 2016-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 7.63 98.3 0.041 1 14.39 3.6 48332 0.5 36.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.75 85.6 1.44 0.33 0.62 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2x2n 1.71 7.63 47085 2522 98.55 0.1976 0.19484 0.1955 0.2486 0.2384 RANDOM 39.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.4 -1.41 -0.04 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.372 r_dihedral_angle_4_deg 18.143 r_dihedral_angle_3_deg 15.319 r_long_range_B_refined 6.722 r_long_range_B_other 6.721 r_dihedral_angle_1_deg 6.354 r_scangle_other 5.483 r_mcangle_it 4.215 r_mcangle_other 4.215 r_scbond_it 3.915
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.372 r_dihedral_angle_4_deg 18.143 r_dihedral_angle_3_deg 15.319 r_long_range_B_refined 6.722 r_long_range_B_other 6.721 r_dihedral_angle_1_deg 6.354 r_scangle_other 5.483 r_mcangle_it 4.215 r_mcangle_other 4.215 r_scbond_it 3.915 r_scbond_other 3.914 r_mcbond_it 3.381 r_mcbond_other 3.367 r_angle_refined_deg 2.002 r_angle_other_deg 0.918 r_chiral_restr 0.124 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3582 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing