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Restriction-modification system Type II R.SwaI, DNA free
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 16-20% PEG1000 (w/v)
100 mM TrisHCl, 20 - 40 mM Calcium Acetate, 150 mM NaBr
Crystal Properties Matthews coefficient Solvent content 2.04 39.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.386 α = 90 b = 65.225 β = 90 c = 67.567 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Nonius Kappa CCD 2013-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.92024 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 50.01 71 0.065 31.6 12.5 16745 1 39.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.95 73 1.048 0.656 1.13 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.88 50.01 16745 890 98.01 0.20178 0.19787 0.2037 0.27915 0.2833 RANDOM 52.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.68 -2.2 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.258 r_dihedral_angle_4_deg 20.527 r_dihedral_angle_3_deg 17.91 r_dihedral_angle_1_deg 7.651 r_long_range_B_other 5.965 r_long_range_B_refined 5.932 r_scangle_other 3.857 r_mcangle_it 2.745 r_mcangle_other 2.744 r_scbond_it 2.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.258 r_dihedral_angle_4_deg 20.527 r_dihedral_angle_3_deg 17.91 r_dihedral_angle_1_deg 7.651 r_long_range_B_other 5.965 r_long_range_B_refined 5.932 r_scangle_other 3.857 r_mcangle_it 2.745 r_mcangle_other 2.744 r_scbond_it 2.562 r_scbond_other 2.561 r_angle_refined_deg 2.185 r_mcbond_it 1.968 r_mcbond_other 1.894 r_angle_other_deg 1.126 r_chiral_restr 0.119 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1897 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing