☰ Navigation Tabs
OXA-24/40 in Complex with Boronic Acid BA16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PAE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 100 mM TRIS-HCl, pH 8.5, 2.0 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 4.05 69.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.347 α = 90 b = 102.347 β = 90 c = 85.438 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2015-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 102.35 100 0.062 19.7 8 82068
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3PAE 1.44 72.37 77950 4037 99.93 0.11311 0.11211 0.13217 0.1495 RANDOM 20.713
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.47 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.63 r_sphericity_free 30.955 r_dihedral_angle_4_deg 20.507 r_dihedral_angle_3_deg 13.236 r_sphericity_bonded 12.688 r_dihedral_angle_1_deg 9.047 r_rigid_bond_restr 6.611 r_long_range_B_refined 4.647 r_long_range_B_other 4.646 r_scangle_other 4.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.63 r_sphericity_free 30.955 r_dihedral_angle_4_deg 20.507 r_dihedral_angle_3_deg 13.236 r_sphericity_bonded 12.688 r_dihedral_angle_1_deg 9.047 r_rigid_bond_restr 6.611 r_long_range_B_refined 4.647 r_long_range_B_other 4.646 r_scangle_other 4.301 r_scbond_other 3.762 r_scbond_it 3.761 r_mcangle_it 3.496 r_mcangle_other 3.495 r_mcbond_it 3.301 r_mcbond_other 3.3 r_angle_refined_deg 2.28 r_angle_other_deg 1.031 r_chiral_restr 0.214 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1924 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing