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Crystal structure of BuGH117Bwt
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AK5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.1-0.18M LiSo4, 0.1M Tris-HCl, 25-30% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.61 52.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.35 α = 90 b = 100.3 β = 90 c = 112.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2015-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 90 99.6 0.147 0.993 11.6 7.1 40335
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 98.4 0.463 0.886 4.2 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4AK5 2.35 74.91 38202 2073 99.44 0.1642 0.162 0.1689 0.2036 0.2063 RANDOM 18.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.03 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.784 r_dihedral_angle_4_deg 14.693 r_dihedral_angle_3_deg 12.744 r_dihedral_angle_1_deg 7.136 r_angle_refined_deg 1.296 r_mcangle_it 1.101 r_angle_other_deg 0.872 r_mcbond_it 0.627 r_mcbond_other 0.626 r_chiral_restr 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.784 r_dihedral_angle_4_deg 14.693 r_dihedral_angle_3_deg 12.744 r_dihedral_angle_1_deg 7.136 r_angle_refined_deg 1.296 r_mcangle_it 1.101 r_angle_other_deg 0.872 r_mcbond_it 0.627 r_mcbond_other 0.626 r_chiral_restr 0.117 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5965 Nucleic Acid Atoms Solvent Atoms 590 Heterogen Atoms 62
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction