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X-ray crystal structure of AA13 LPMO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OPB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 20%(v/v)PEG3000
0.2M Zn-acetate
0.1 M Malate/MES/TRIS pH5.0
Crystal Properties Matthews coefficient Solvent content 1.88 34.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.56 α = 90 b = 59.08 β = 90 c = 71.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2014-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1.0000 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 30 98.2 0.082 17.81 7.52 47483
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 92.3 0.433 3.59 4.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4OPB 1.3 30 45856 1627 98.13 0.09266 0.09118 0.0913 0.13484 0.1347 RANDOM 10.238
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.15 0.1
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.64 r_dihedral_angle_2_deg 33.397 r_dihedral_angle_3_deg 13.051 r_sphericity_bonded 12.774 r_dihedral_angle_4_deg 8.968 r_dihedral_angle_1_deg 7.502 r_long_range_B_refined 6.766 r_long_range_B_other 5.037 r_rigid_bond_restr 4.526 r_scangle_other 3.708
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.64 r_dihedral_angle_2_deg 33.397 r_dihedral_angle_3_deg 13.051 r_sphericity_bonded 12.774 r_dihedral_angle_4_deg 8.968 r_dihedral_angle_1_deg 7.502 r_long_range_B_refined 6.766 r_long_range_B_other 5.037 r_rigid_bond_restr 4.526 r_scangle_other 3.708 r_scbond_it 3.237 r_scbond_other 3.237 r_mcangle_it 2.631 r_mcangle_other 2.63 r_angle_refined_deg 2.011 r_mcbond_it 1.856 r_mcbond_other 1.856 r_angle_other_deg 0.973 r_chiral_restr 0.13 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1799 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling