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X-ray crystal structure of AA13 LPMO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OPB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 20%(v/v)PEG3000
0.2M Zn-acetate
0.1M Malate/MES/TRIS pH5.0
Crystal Properties Matthews coefficient Solvent content 2.08 40.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.04 α = 90 b = 61.49 β = 90 c = 73.79 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2012-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9334 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 98.7 0.088 17.96 6.65 26074
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.72 90.2 0.706 2.11 4.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4OPB 1.65 30 25174 900 98.72 0.12611 0.12344 0.19879 0.1799 RANDOM 16.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.88 -0.34 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.925 r_sphericity_free 23.307 r_sphericity_bonded 15.324 r_dihedral_angle_3_deg 12.105 r_dihedral_angle_4_deg 11.221 r_dihedral_angle_1_deg 7.309 r_scangle_other 6.032 r_scbond_it 5.814 r_scbond_other 5.736 r_long_range_B_refined 5.393
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.925 r_sphericity_free 23.307 r_sphericity_bonded 15.324 r_dihedral_angle_3_deg 12.105 r_dihedral_angle_4_deg 11.221 r_dihedral_angle_1_deg 7.309 r_scangle_other 6.032 r_scbond_it 5.814 r_scbond_other 5.736 r_long_range_B_refined 5.393 r_long_range_B_other 5.089 r_rigid_bond_restr 4.723 r_mcangle_it 3.064 r_mcangle_other 3.063 r_mcbond_other 2.643 r_mcbond_it 2.641 r_angle_refined_deg 1.714 r_angle_other_deg 0.873 r_chiral_restr 0.1 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1799 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling