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Human carboanhydrase F131C_C206S double mutant in complex with SA-2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 3 M (NH4)2SO4, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.11 41.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.35 α = 90 b = 41.45 β = 104.29 c = 72.46 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 15 97.7 0.071 10.1 2.9 58812
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.4 98.4 0.442 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2VVA 1.3 15 55851 2940 97.76 0.15133 0.14807 0.15 0.17137 0.1747 RANDOM 15.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.13 -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.308 r_dihedral_angle_4_deg 19.262 r_sphericity_free 19.227 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 6.339 r_sphericity_bonded 5.109 r_long_range_B_refined 2.414 r_long_range_B_other 2.176 r_rigid_bond_restr 1.72 r_scangle_other 1.402
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.308 r_dihedral_angle_4_deg 19.262 r_sphericity_free 19.227 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 6.339 r_sphericity_bonded 5.109 r_long_range_B_refined 2.414 r_long_range_B_other 2.176 r_rigid_bond_restr 1.72 r_scangle_other 1.402 r_angle_refined_deg 1.306 r_scbond_it 1.268 r_scbond_other 1.267 r_mcangle_other 1.05 r_mcangle_it 1.043 r_angle_other_deg 0.886 r_mcbond_it 0.812 r_mcbond_other 0.79 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2044 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing