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Crystal Structure of TgCDPK1 from toxoplasma gondii complexed with 5GA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KU2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 PEG 3350, di Sodium-Tart
Crystal Properties Matthews coefficient Solvent content 1.9 35.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.757 α = 90 b = 72.175 β = 97.61 c = 66.142 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2015-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97921 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 72.18 98.3 0.05 3.7 27510 48.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3KU2 2.05 25.55 27482 1360 97.98 0.2045 0.2026 0.2134 0.2404 0.2471 RANDOM 65.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.8081 2.6116 2.1226 -7.9306
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.05 t_omega_torsion 2.88 t_angle_deg 0.92 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.05 t_omega_torsion 2.88 t_angle_deg 0.92 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3311 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 24
Software Software Software Name Purpose BUSTER refinement XDS data reduction PDB_EXTRACT data extraction Aimless data scaling