5T3I

cyan fluorescence protein soaked with selenourea for 5 min


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP529316% (w/v) PEG 3350, 50 mM citric acid, and 50 mM bis-tris propane buffer pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.0740.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.116α = 90
b = 61.52β = 90
c = 69.559γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2016-06-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID0.978APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6501000.0524.77.330369
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.661001.281.87.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.630.7628216148797.70.1360.1340.177RANDOM18.76
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.160.18-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.42
r_sphericity_free29.988
r_dihedral_angle_3_deg12.662
r_sphericity_bonded8.53
r_dihedral_angle_4_deg8.065
r_dihedral_angle_1_deg6.948
r_scangle_other4.225
r_long_range_B_refined4.134
r_long_range_B_other4.013
r_scbond_other3.655
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.42
r_sphericity_free29.988
r_dihedral_angle_3_deg12.662
r_sphericity_bonded8.53
r_dihedral_angle_4_deg8.065
r_dihedral_angle_1_deg6.948
r_scangle_other4.225
r_long_range_B_refined4.134
r_long_range_B_other4.013
r_scbond_other3.655
r_scbond_it3.654
r_mcangle_other2.868
r_mcangle_it2.855
r_mcbond_it2.411
r_mcbond_other2.345
r_angle_refined_deg1.674
r_rigid_bond_restr1.496
r_angle_other_deg0.95
r_chiral_restr0.089
r_gen_planes_refined0.021
r_gen_planes_other0.015
r_bond_refined_d0.011
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1822
Nucleic Acid Atoms
Solvent Atoms154
Heterogen Atoms57

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
SHELXDphasing