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Structure of D141A variant of B. pseudomallei KatG complexed with INH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16-20% PEG 4000, 20% MPD, 0.1 M sodium citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 3.2 61.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.77 α = 90 b = 115.59 β = 90 c = 174.57 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.98 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 96.38 99.4 0.089 10.7 5.1 222000
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 99.2 0.403 1.9 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MWV 1.7 20 210857 11143 99.39 0.1466 0.1454 0.1587 0.1703 0.1812 RANDOM 22.962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.64 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.381 r_dihedral_angle_4_deg 16.244 r_dihedral_angle_3_deg 12.704 r_dihedral_angle_1_deg 5.886 r_mcangle_it 2.802 r_angle_refined_deg 2.475 r_mcbond_it 2.02 r_mcbond_other 2.019 r_angle_other_deg 1.309 r_chiral_restr 0.169
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.381 r_dihedral_angle_4_deg 16.244 r_dihedral_angle_3_deg 12.704 r_dihedral_angle_1_deg 5.886 r_mcangle_it 2.802 r_angle_refined_deg 2.475 r_mcbond_it 2.02 r_mcbond_other 2.019 r_angle_other_deg 1.309 r_chiral_restr 0.169 r_bond_refined_d 0.031 r_gen_planes_refined 0.016 r_gen_planes_other 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11004 Nucleic Acid Atoms Solvent Atoms 1525 Heterogen Atoms 166
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing