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Structure of D141A variant of B. pseudomallei KatG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 16-20% PEG 4000, 20% MPD, 0.1 M sodium citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 3.14 60.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.77 α = 90 b = 113.45 β = 90 c = 174.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.98 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 95.14 95.2 0.087 8.8 3.9 228125
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 92.4 0.403 1.8 3.8 31995
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MWV 1.65 20 216740 11385 95.17 0.1419 0.1404 0.1538 0.1706 0.1797 RANDOM 21.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.37 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.522 r_dihedral_angle_4_deg 15.932 r_dihedral_angle_3_deg 12.632 r_dihedral_angle_1_deg 5.983 r_mcangle_it 2.708 r_angle_refined_deg 2.482 r_mcbond_it 1.885 r_mcbond_other 1.877 r_angle_other_deg 1.392 r_chiral_restr 0.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.522 r_dihedral_angle_4_deg 15.932 r_dihedral_angle_3_deg 12.632 r_dihedral_angle_1_deg 5.983 r_mcangle_it 2.708 r_angle_refined_deg 2.482 r_mcbond_it 1.885 r_mcbond_other 1.877 r_angle_other_deg 1.392 r_chiral_restr 0.176 r_bond_refined_d 0.03 r_gen_planes_refined 0.017 r_gen_planes_other 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11008 Nucleic Acid Atoms Solvent Atoms 1582 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing