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Crystal structure of B. pseudomallei KatG with NAD bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16-20% PEG 4000, 20% MPD, 25 mM NaCl, 0.1 M sodium citrate, pH 5.6
Crystal Properties Matthews coefficient Solvent content 3.17 61.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.58 α = 90 b = 114.92 β = 90 c = 174.48 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 95.97 99.9 0.084 10.3 5.1 225305
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.78 100 0.37 2.1 5 36718
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MWV 1.69 20 213984 11236 99.89 0.1407 0.1394 0.1534 0.1646 0.1742 RANDOM 23.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.232 r_dihedral_angle_4_deg 16.664 r_dihedral_angle_3_deg 12.587 r_dihedral_angle_1_deg 5.793 r_mcangle_it 2.749 r_angle_refined_deg 2.474 r_mcbond_it 2.004 r_mcbond_other 1.999 r_angle_other_deg 1.371 r_chiral_restr 0.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.232 r_dihedral_angle_4_deg 16.664 r_dihedral_angle_3_deg 12.587 r_dihedral_angle_1_deg 5.793 r_mcangle_it 2.749 r_angle_refined_deg 2.474 r_mcbond_it 2.004 r_mcbond_other 1.999 r_angle_other_deg 1.371 r_chiral_restr 0.163 r_bond_refined_d 0.029 r_gen_planes_refined 0.017 r_gen_planes_other 0.011 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11014 Nucleic Acid Atoms Solvent Atoms 1576 Heterogen Atoms 161
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing