☰ Navigation Tabs
PanDDA analysis group deposition -- Endothiapepsin ground state model 15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 290 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.89 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.261 α = 90 b = 72.958 β = 109.35 c = 52.57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.827 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.01 49.65 95.6 0.102 0.11 0.998 8.28 6.958 153423 14.469
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.01 1.07 0.867 2.624 2.852 0.287 0.57 5.63 27293
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.01 49.65 153423 8259 95.63 0.1672 0.16685 0.16718 0.1901 RANDOM 12.537
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.29 0.08 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.154 r_dihedral_angle_4_deg 15.87 r_dihedral_angle_3_deg 8.666 r_dihedral_angle_1_deg 6.969 r_angle_refined_deg 1.913 r_angle_other_deg 1.621 r_mcangle_it 1.556 r_mcbond_it 1.084 r_mcbond_other 1.08 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.154 r_dihedral_angle_4_deg 15.87 r_dihedral_angle_3_deg 8.666 r_dihedral_angle_1_deg 6.969 r_angle_refined_deg 1.913 r_angle_other_deg 1.621 r_mcangle_it 1.556 r_mcbond_it 1.084 r_mcbond_other 1.08 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2369 Nucleic Acid Atoms Solvent Atoms 341 Heterogen Atoms 63
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing PHENIX refinement