☰ Navigation Tabs
PanDDA analysis group deposition -- Aar2/RNaseH in complex with fragment F2X-Entry A12b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 19% (w/v) Peg 4000, 3% (v/v) DMSO, 0.1M Tris-HCl pH 8.5, 0.2M Li2SO4
Crystal Properties Matthews coefficient Solvent content 2.46 49.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.522 α = 90 b = 82.031 β = 108.83 c = 93.961 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.827 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 43.77 97.5 0.079 0.086 0.998 9.99 6.711 127211 39.405
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.69 0.913 2.681 2.902 0.355 0.55 6.19 13748
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.36 43.77 127211 6578 97.91 0.2179 0.21707 0.2264 0.2179 0.2277 RANDOM 28.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 -0.07 -1.15 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.311 r_dihedral_angle_4_deg 17.302 r_dihedral_angle_3_deg 13.577 r_dihedral_angle_1_deg 6.34 r_mcangle_it 3.588 r_mcbond_it 2.456 r_mcbond_other 2.456 r_angle_refined_deg 1.712 r_angle_other_deg 1.462 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.311 r_dihedral_angle_4_deg 17.302 r_dihedral_angle_3_deg 13.577 r_dihedral_angle_1_deg 6.34 r_mcangle_it 3.588 r_mcbond_it 2.456 r_mcbond_other 2.456 r_angle_refined_deg 1.712 r_angle_other_deg 1.462 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4562 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 62
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing PHENIX refinement