☰ Navigation Tabs
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000074a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5AHO 5aho
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 30% PEG1000, 0.1 M MIB buffer
Crystal Properties Matthews coefficient Solvent content 2.2 44.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.05 α = 90 b = 57.22 β = 90 c = 115.26 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray PIXEL DECTRIS PILATUS 6M 2016-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 52.05 99.3 0.065 0.071 0.028 0.999 13.7 6.5 65269
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.46 98.4 1.33 1.467 0.608 0.515 5.7 4738
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5aho 1.42 52.05 62054 3150 99.07 0.1548 0.1531 0.1529 0.187 0.1864 RANDOM 26.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.93 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.965 r_sphericity_free 30.535 r_sphericity_bonded 12.675 r_dihedral_angle_3_deg 11.335 r_dihedral_angle_4_deg 9.627 r_dihedral_angle_1_deg 6.271 r_mcangle_it 2.733 r_mcbond_it 2.078 r_mcbond_other 2.063 r_angle_refined_deg 1.364
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.965 r_sphericity_free 30.535 r_sphericity_bonded 12.675 r_dihedral_angle_3_deg 11.335 r_dihedral_angle_4_deg 9.627 r_dihedral_angle_1_deg 6.271 r_mcangle_it 2.733 r_mcbond_it 2.078 r_mcbond_other 2.063 r_angle_refined_deg 1.364 r_rigid_bond_restr 1.253 r_angle_other_deg 0.953 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2696 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction REFMAC phasing