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E1M, Y96W, S119W MUTANT OF RH. BLASTICA PORIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PRN PDB ENTRY 1PRN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 pH 7.8
Crystal Properties Matthews coefficient Solvent content 4.27 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.6 α = 90 b = 104.6 β = 90 c = 124.66 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR SIEMENS 1996-10-10 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 12 92 0.046 0.046 13.8 2.2 31979 4 21.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 78.1 0.142 0.142 3.4 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER THROUGHOUT PDB ENTRY 1PRN 2 12 1 31979 3218 92 0.163 0.1643 0.188 SAME AS WILD-TYPE 27.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.8 p_staggered_tor 16.3 p_planar_tor 3.9 p_scangle_it 3.78 p_scbond_it 2.26 p_mcangle_it 1.73 p_mcbond_it 1.36 p_chiral_restr 0.536 p_multtor_nbd 0.236 p_singtor_nbd 0.182
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.8 p_staggered_tor 16.3 p_planar_tor 3.9 p_scangle_it 3.78 p_scbond_it 2.26 p_mcangle_it 1.73 p_mcbond_it 1.36 p_chiral_restr 0.536 p_multtor_nbd 0.236 p_singtor_nbd 0.182 p_hb_or_metal_coord 0.152 p_xyhbond_nbd 0.152 p_planar_d 0.042 p_angle_d 0.03 p_plane_restr 0.0179 p_bond_d 0.016 p_angle_deg p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 63
Software Software Software Name Purpose CCP4 model building REFMAC refinement XDS data reduction XSCALE data scaling CCP4 phasing