X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7298PEG 3350, sodium actate, BisTrisPropane
Crystal Properties
Matthews coefficientSolvent content
2.2344.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.022α = 90
b = 104.681β = 90
c = 38.311γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-03-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.00SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2542.34195.80.0770.0850.99711.877508-318.068
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.251.3383.20.5190.5760.9452.65

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.2538.317269338261000.26570.26490.2803RANDOM15.725
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.23-0.01-0.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.4
r_dihedral_angle_4_deg15.425
r_dihedral_angle_3_deg12.469
r_dihedral_angle_1_deg6.285
r_scangle_it4.254
r_scbond_it2.836
r_angle_other_deg2.358
r_mcangle_it1.917
r_angle_refined_deg1.865
r_mcbond_it1.125
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.4
r_dihedral_angle_4_deg15.425
r_dihedral_angle_3_deg12.469
r_dihedral_angle_1_deg6.285
r_scangle_it4.254
r_scbond_it2.836
r_angle_other_deg2.358
r_mcangle_it1.917
r_angle_refined_deg1.865
r_mcbond_it1.125
r_mcbond_other0.349
r_chiral_restr0.114
r_bond_refined_d0.019
r_gen_planes_refined0.012
r_gen_planes_other0.009
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2036
Nucleic Acid Atoms
Solvent Atoms204
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing