☰ Navigation Tabs
humanized rat catechol O-methyltransferase in complex with 5-(4-fluorophenyl)-2,3-dihydroxy-N-[[3-[(1H-indazol-5-ylamino)methyl]phenyl]methyl]benzamide at 1.20A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.21 44.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.967 α = 90 b = 54.237 β = 90 c = 80.648 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999900 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 40.32 98.2 0.055 0.061 0.999 16.22 4.92 68073 -3 14.203
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 92.2 0.412 0.472 0.845 3.45
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.2 40.32 60319 3231 91.72 0.1311 0.1298 0.129 0.1568 0.1531 RANDOM 9.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.06 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.229 r_rigid_bond_restr 16.927 r_dihedral_angle_4_deg 16.879 r_dihedral_angle_3_deg 12.553 r_sphericity_free 9.69 r_sphericity_bonded 5.269 r_dihedral_angle_1_deg 5.213 r_angle_refined_deg 1.754 r_angle_other_deg 0.937 r_chiral_restr 0.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.229 r_rigid_bond_restr 16.927 r_dihedral_angle_4_deg 16.879 r_dihedral_angle_3_deg 12.553 r_sphericity_free 9.69 r_sphericity_bonded 5.269 r_dihedral_angle_1_deg 5.213 r_angle_refined_deg 1.754 r_angle_other_deg 0.937 r_chiral_restr 0.224 r_mcbond_it 0.124 r_mcbond_other 0.098 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1673 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 62
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing