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Structure of DraG-GlnZ-delta42-54 complex from Azospirillum brasilense
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 35 % (v/v) glycerol ethoxylate, 0.2 M lithium citrate
Crystal Properties Matthews coefficient Solvent content 3.2 61.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.74 α = 90 b = 116.74 β = 90 c = 105.616 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2014-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 46.8 99.8 0.05 10.9 5.2 77898
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.55 45.6 74016 3881 99.98 0.14505 0.14404 0.1471 0.16453 0.1664 RANDOM 14.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.42 -3.42 6.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.601 r_dihedral_angle_4_deg 19.937 r_dihedral_angle_3_deg 15.94 r_dihedral_angle_1_deg 5.851 r_long_range_B_refined 4.842 r_long_range_B_other 4.448 r_scangle_other 2.625 r_angle_other_deg 2.547 r_angle_refined_deg 2.443 r_scbond_it 1.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.601 r_dihedral_angle_4_deg 19.937 r_dihedral_angle_3_deg 15.94 r_dihedral_angle_1_deg 5.851 r_long_range_B_refined 4.842 r_long_range_B_other 4.448 r_scangle_other 2.625 r_angle_other_deg 2.547 r_angle_refined_deg 2.443 r_scbond_it 1.983 r_scbond_other 1.982 r_mcangle_it 1.652 r_mcangle_other 1.652 r_mcbond_it 1.313 r_mcbond_other 1.31 r_chiral_restr 0.181 r_bond_refined_d 0.025 r_gen_planes_other 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3019 Nucleic Acid Atoms Solvent Atoms 507 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing