5OSW

Structure of caprine serum albumin in complex with 3,5-diiodosalicylic acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5283Jeffamine ED2001, Citric buffer pH 5, 0.01M BaCl2
Crystal Properties
Matthews coefficientSolvent content
2.2545.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.42α = 90
b = 66.06β = 90
c = 213.59γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDmirrors2014-09-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.20.9184BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.785098.70.0590.99920.167.1257982
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.8895.40.9510.6342.36.65

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5ORI1.7850.0156794118898.740.179950.178660.24075RANDOM41.856
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.891.38-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.077
r_sphericity_free22.323
r_dihedral_angle_4_deg19.165
r_dihedral_angle_3_deg16.478
r_sphericity_bonded11.695
r_rigid_bond_restr8.389
r_dihedral_angle_1_deg6.094
r_long_range_B_refined5.015
r_scbond_it4.66
r_mcangle_it3.916
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.077
r_sphericity_free22.323
r_dihedral_angle_4_deg19.165
r_dihedral_angle_3_deg16.478
r_sphericity_bonded11.695
r_rigid_bond_restr8.389
r_dihedral_angle_1_deg6.094
r_long_range_B_refined5.015
r_scbond_it4.66
r_mcangle_it3.916
r_mcbond_it3.377
r_angle_refined_deg1.926
r_chiral_restr0.136
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4643
Nucleic Acid Atoms
Solvent Atoms488
Heterogen Atoms112

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing