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Structure of the Rift Valley fever virus NSs protein core domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 PEG 10000, NaCl, HEPES, DTT
Crystal Properties Matthews coefficient Solvent content 5.23 76.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.5 α = 90 b = 124.5 β = 90 c = 174.26 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 2.0 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 107.83 99.9 0.098 32.3 45 41684
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.25 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 107.82 39005 2065 99.91 0.2019 0.2012 0.2116 0.2166 0.2232 RANDOM 63.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.06 0.13 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.131 r_dihedral_angle_3_deg 13.573 r_dihedral_angle_4_deg 11.045 r_dihedral_angle_1_deg 5.959 r_angle_refined_deg 1.767 r_angle_other_deg 1.344 r_chiral_restr 0.098 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.131 r_dihedral_angle_3_deg 13.573 r_dihedral_angle_4_deg 11.045 r_dihedral_angle_1_deg 5.959 r_angle_refined_deg 1.767 r_angle_other_deg 1.344 r_chiral_restr 0.098 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2494 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction xia2 data scaling SHELXCD phasing