X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.82911.6 M sodium citrate, 50 mM Tris-HCl pH 7.8
Crystal Properties
Matthews coefficientSolvent content
1.9536.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.568α = 90
b = 76.099β = 90
c = 143.335γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-02-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91841BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.140.4698.50.0580.0720.9987.062.586352363-315.811
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1797.70.5890.7420.7561.142.455

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT3PO61.140.46182620147399.590.17540.17520.202RANDOM18.018
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.98-0.471.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.769
r_dihedral_angle_4_deg16.995
r_sphericity_free13.327
r_dihedral_angle_3_deg12.748
r_dihedral_angle_1_deg6.75
r_rigid_bond_restr6.392
r_sphericity_bonded5.137
r_angle_other_deg5.091
r_angle_refined_deg1.728
r_bond_other_d1.131
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.769
r_dihedral_angle_4_deg16.995
r_sphericity_free13.327
r_dihedral_angle_3_deg12.748
r_dihedral_angle_1_deg6.75
r_rigid_bond_restr6.392
r_sphericity_bonded5.137
r_angle_other_deg5.091
r_angle_refined_deg1.728
r_bond_other_d1.131
r_chiral_restr0.118
r_gen_planes_other0.018
r_bond_refined_d0.015
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4082
Nucleic Acid Atoms
Solvent Atoms329
Heterogen Atoms63

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction