5OF8

Cu nitrite reductase serial data at varying temperatures 190K 0.48MGy


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5298100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
1.9536.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 94.969α = 90
b = 94.969β = 90
c = 94.969γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray190PIXELDECTRIS PILATUS 6M-F2015-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.99SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3442.4899.90.030.9913.16.564147
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.341.3699.90.7460.291.16

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5I6K1.3442.4860899317899.980.131130.128990.17272RANDOM20.493
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.566
r_sphericity_free23.422
r_dihedral_angle_4_deg18.442
r_dihedral_angle_3_deg12.055
r_sphericity_bonded7.543
r_dihedral_angle_1_deg7.431
r_rigid_bond_restr7.207
r_long_range_B_refined3.569
r_long_range_B_other3.394
r_scangle_other2.951
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.566
r_sphericity_free23.422
r_dihedral_angle_4_deg18.442
r_dihedral_angle_3_deg12.055
r_sphericity_bonded7.543
r_dihedral_angle_1_deg7.431
r_rigid_bond_restr7.207
r_long_range_B_refined3.569
r_long_range_B_other3.394
r_scangle_other2.951
r_scbond_it2.524
r_scbond_other2.501
r_mcangle_other2.315
r_mcangle_it2.308
r_angle_other_deg2.17
r_mcbond_it1.933
r_mcbond_other1.897
r_angle_refined_deg1.627
r_chiral_restr0.104
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_gen_planes_other0.005
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2574
Nucleic Acid Atoms
Solvent Atoms274
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing