5ODF | pdb_00005odf

NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
2	2D DQF-COSY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6	100% D2O	100 Phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
3	2D 1H-1H TOCSY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6	100% D2O	100 Phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
4	2D 1H-13C HSQC	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6	100% D2O	100 Phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
5	1H-31P COSY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6	100% D2O	100 Phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
6	2D 1H-1H NOESY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6	100% D2O	100 Phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
7	2D 1H-1H NOESY	1.3 nM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6	90% H2O/10% D2O	100 Phosphate mM	7.4	1 atm	298	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	na
Conformers Calculated Total Number	10
Conformers Submitted Total Number	10
Representative Model	1 (na)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	TopSpin		Bruker Biospin
5	chemical shift assignment	Sparky		Goddard
2	structure calculation	MARDIGRAS		N. Ulyanov
3	structure calculation	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
4	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman