SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') | 90% H2O/10% D2O | 100mM phoshate mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
| 2 | 2D 1H-1H TOCSY | 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') | 90% H2O/10% D2O | 100mM phoshate mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
| 3 | 2D DQF-COSY | 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') | 90% H2O/10% D2O | 100mM phoshate mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
| 4 | 2D 1H-13C HSQC | 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') | 90% H2O/10% D2O | 100mM phoshate mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
| 5 | 31P- H COSY | 1.3 mM NA DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') | 90% H2O/10% D2O | 100mM phoshate mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | |
| Conformers Calculated Total Number | |
| Conformers Submitted Total Number | 10 |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | Sparky | Goddard | |
| 2 | processing | TopSpin | Bruker Biospin | |
| 3 | structure calculation | MARDIGRAS | N. Ulyanov | |
| 4 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 5 | structure calculation | UCSF Chimera | UCSF | |
| 6 | peak picking | Sparky | Goddard | |
