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Crystal structure of ScGas2 in complex with compound 11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PEG 3500, ammonium sulfate, BIS-Tris pH 6
Crystal Properties Matthews coefficient Solvent content 2.11 41.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.92 α = 90 b = 70.38 β = 90 c = 150.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 150.07 94.9 0.076 13.4 9.1 70765
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.65 73.9 0.712 2.5 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2W62 1.57 150.07 68554 2135 94.62 0.2211 0.22073 0.2267 0.23306 0.2412 RANDOM 24.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 0.89 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.52 r_dihedral_angle_4_deg 13.594 r_dihedral_angle_3_deg 11.862 r_dihedral_angle_1_deg 5.851 r_long_range_B_refined 3.341 r_long_range_B_other 3.341 r_mcangle_it 1.166 r_mcangle_other 1.165 r_angle_refined_deg 1.122 r_scangle_other 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.52 r_dihedral_angle_4_deg 13.594 r_dihedral_angle_3_deg 11.862 r_dihedral_angle_1_deg 5.851 r_long_range_B_refined 3.341 r_long_range_B_other 3.341 r_mcangle_it 1.166 r_mcangle_other 1.165 r_angle_refined_deg 1.122 r_scangle_other 0.97 r_angle_other_deg 0.913 r_mcbond_it 0.634 r_mcbond_other 0.634 r_scbond_it 0.556 r_scbond_other 0.556 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3423 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing