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Cellobiohydrolase Cel7A from T. atroviride
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 Precipitant
5 mM NiCl2,
0.1 M HEPES pH 7.0
20% w/v PEG 3350
Protein sample:
20 mM Bis-Tris buffer, pH 7.0
Mixed 1:1
Crystal Properties Matthews coefficient Solvent content 2.31 46.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.17 α = 90 b = 71.67 β = 90 c = 104.22 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2013-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 0.9 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 34.74 99.9 0.132 9.2 5.2 87266
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.82 99.6 0.44 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 34.74 82833 4367 99.88 0.14912 0.14783 0.1593 0.17309 0.1816 RANDOM 11.212
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.03 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.51 r_dihedral_angle_4_deg 17.76 r_dihedral_angle_3_deg 11.344 r_dihedral_angle_1_deg 6.338 r_long_range_B_refined 4.008 r_long_range_B_other 4.008 r_angle_refined_deg 1.356 r_mcangle_other 1.153 r_mcangle_it 1.152 r_scangle_other 1.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.51 r_dihedral_angle_4_deg 17.76 r_dihedral_angle_3_deg 11.344 r_dihedral_angle_1_deg 6.338 r_long_range_B_refined 4.008 r_long_range_B_other 4.008 r_angle_refined_deg 1.356 r_mcangle_other 1.153 r_mcangle_it 1.152 r_scangle_other 1.082 r_angle_other_deg 0.924 r_scbond_it 0.663 r_scbond_other 0.661 r_mcbond_it 0.643 r_mcbond_other 0.639 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6344 Nucleic Acid Atoms Solvent Atoms 931 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing