X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V0A 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP3.75293100 mM NaAct pH 3.75, 100 mM NaCl, 2.8 M AmSO4
Crystal Properties
Matthews coefficientSolvent content
238.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.05α = 90
b = 67.96β = 106.73
c = 51.18γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-01-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.987DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.367.8498.80.0647.1360537
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3397.70.5661.42.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2v0a1.349.0157561294398.710.153080.151440.18566RANDOM15.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.81-0.630.950.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.755
r_sphericity_free30.637
r_sphericity_bonded12.458
r_dihedral_angle_3_deg11.118
r_dihedral_angle_4_deg10.068
r_dihedral_angle_1_deg6.475
r_long_range_B_refined5.305
r_long_range_B_other4.345
r_rigid_bond_restr3.541
r_scangle_other2.515
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.755
r_sphericity_free30.637
r_sphericity_bonded12.458
r_dihedral_angle_3_deg11.118
r_dihedral_angle_4_deg10.068
r_dihedral_angle_1_deg6.475
r_long_range_B_refined5.305
r_long_range_B_other4.345
r_rigid_bond_restr3.541
r_scangle_other2.515
r_scbond_it2.004
r_scbond_other2.002
r_mcangle_other2.001
r_mcangle_it1.999
r_angle_other_deg1.541
r_mcbond_it1.434
r_angle_refined_deg1.425
r_mcbond_other1.424
r_chiral_restr0.078
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2220
Nucleic Acid Atoms
Solvent Atoms313
Heterogen Atoms46

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing