5O2Y

NMR structure of the calcium bound form of PulG, major pseudopilin from Klebsiella oxytoca T2SS


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
23D HNCO0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
3HNCACO0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
43D HNCACB0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
53D CBCA(CO)NH0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
63D HCCH-TOCSY0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
73D H(CCO)NH0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
83D 1H-15N NOESY0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Bruker AvanceIII 950
93D 1H-13C NOESY0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Bruker AvanceIII 950
102D 1H-13C HSQC0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
113D CC(CO)NH0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
122D HBCBCGCDHD0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
132D HBCBCGCDCEHE0.5 mM [U-99% 13C; U-99% 15N] PulG, 50 mM non-labeled HEPES, 50 mM non-labeled sodium chloride, 1 mM non-labeled CaCl290% H2O/10% D2O50 mM71 atm298Varian INOVA 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAvanceIII950
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRVarian
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCcpNmr AnalysisCCPN
4peak pickingCcpNmr AnalysisCCPN
5collectionTopSpinBruker Biospin
6processingTopSpinBruker Biospin
7structure calculationARIALinge, O'Donoghue and Nilges