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NMR structure of TIA-1 RRM1 domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM Uniform 15N labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 3 3D 1H-15N NOESY 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 4 2D 1H-13C HSQC aliphatic 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 5 2D 1H-13C HSQC aromatic 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 6 3D 1H-13C NOESY aliphatic 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 7 3D 1H-13C NOESY aromatic 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 8 3D HCCH-TOCSY 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 800 9 3D HNCACB 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 10 3D HNCO 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 11 3D CBCA(CO)NH 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 12 3D HNCA 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 600 13 3D HBHA(CO)NH 0.5 mM Uniform 15N, 13C labelling Protein 90% H2O/10% D2O 100 mM 6 1 atm 298 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800 2 Bruker AVANCE III 600
NMR Refinement Method Details Software molecular dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 5 refinement ARIA Linge, O'Donoghue and Nilges 4 collection TopSpin Bruker Biospin 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 peak picking CcpNmr Analysis CCPN 8 chemical shift assignment CcpNmr Analysis CCPN