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2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.902 r_dihedral_angle_1_deg 25.47 r_long_range_B_refined 19.491 r_long_range_B_other 19.491 r_dihedral_angle_4_deg 15.672 r_mcangle_it 15.632 r_mcangle_other 15.632 r_scangle_other 14.042 r_dihedral_angle_3_deg 13.343 r_mcbond_it 10.364
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.902 r_dihedral_angle_1_deg 25.47 r_long_range_B_refined 19.491 r_long_range_B_other 19.491 r_dihedral_angle_4_deg 15.672 r_mcangle_it 15.632 r_mcangle_other 15.632 r_scangle_other 14.042 r_dihedral_angle_3_deg 13.343 r_mcbond_it 10.364 r_mcbond_other 10.361 r_scbond_it 9.264 r_scbond_other 9.264 r_angle_refined_deg 1.66 r_angle_other_deg 1.576 r_chiral_restr 0.172 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample VemP-stalled ribosome-nascent chain complex Sample Components VemP-stalled ribosome-nascent chain complex VemP-stalled ribosome-nascent chain complex VemP-stalled ribosome-nascent chain complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 400024 Reported Resolution (Å) 2.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 2.4
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch 0.50 CTF CORRECTION CTFFIND 4 MODEL FITTING UCSF Chimera MODEL FITTING Coot INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT RELION 1.4 CLASSIFICATION RELION 1.4 RECONSTRUCTION RELION 1.4 MODEL REFINEMENT PHENIX MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 850433