5NQ4

Cytotoxin-1 in DPC-micelle


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 50 M no H2O, 5.5 M 99.9%-deuterated D2O, 0.01 uM no HCl90% H2O/10% D2O50 mM6.01 bar323Bruker DRX 500
22D 1H-1H TOCSY3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 50 M no H2O, 5.5 M 99.9%-deuterated D2O, 0.01 uM no HCl90% H2O/10% D2O50 mM6.01 bar323Bruker DRX 500
32D DQF-COSY3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 50 M no H2O, 5.5 M 99.9%-deuterated D2O, 0.01 uM no HCl90% H2O/10% D2O50 mM6.01 bar323Bruker DRX 500
4diffusion3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 50 M no H2O, 5.5 M 99.9%-deuterated D2O, 0.01 uM no HCl90% H2O/10% D2O50 mM6.01 bar323Varian UNITY 600
52D 1H-1H NOESY3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 55 M 100%-deuterated D2O, 0.01 uM no HCl100% D2O50 mM6.01 bar323Bruker DRX 500
62D 1H-1H TOCSY3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 55 M 100%-deuterated D2O, 0.01 uM no HCl100% D2O50 mM6.01 bar323Bruker DRX 500
72D DQF-COSY3.0 mM no cytotoxin-1, 180.0 mM fully deuterated dodecylphosphocholine, 50 mM no potassium chloride, 55 M 100%-deuterated D2O, 0.01 uM no HCl100% D2O50 mM6.01 bar323Bruker DRX 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2VarianUNITY600
NMR Refinement
MethodDetailsSoftware
simulated annealingthe structures are based on 517 NOE constraints, 160 hudrogen bond and 24 disulfide bond constraints, and 236 constraints for 193 anglesCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.6Bruker Biospin
5processingNMRPipe2001.085.20.47Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2structure calculationCYANA1.0.6Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentXEASY1.2.11Bartels et al.
4peak pickingXEASYBartels et al.