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hPAD4 crystal complex with AFM-41a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 283 0.1M imidazole pH7.5, 0.2mM LiSO4, 8-11% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.84 56.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.15 α = 90 b = 60.94 β = 124.68 c = 115.32 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS 6M-F 2015-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.52 55.79 99.1 0.999 17 3.4 28377
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.52 2.59 98.6 0.644 1.5 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.52 55.79 26964 1412 98.82 0.18255 0.18003 0.1907 0.22936 0.2411 RANDOM 54.638
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.43 -3.14 9.81 -1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.84 r_dihedral_angle_3_deg 15.701 r_dihedral_angle_4_deg 14.313 r_long_range_B_refined 10.898 r_long_range_B_other 10.898 r_dihedral_angle_1_deg 7.395 r_scangle_other 6.422 r_mcangle_it 6.286 r_mcangle_other 6.285 r_scbond_it 4.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.84 r_dihedral_angle_3_deg 15.701 r_dihedral_angle_4_deg 14.313 r_long_range_B_refined 10.898 r_long_range_B_other 10.898 r_dihedral_angle_1_deg 7.395 r_scangle_other 6.422 r_mcangle_it 6.286 r_mcangle_other 6.285 r_scbond_it 4.005 r_scbond_other 4.004 r_mcbond_other 3.981 r_mcbond_it 3.98 r_angle_refined_deg 1.706 r_angle_other_deg 1.033 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5024 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XSCALE data scaling PHASER phasing