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hPAD4 crystal complex with AFM-30a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 283 0.1 imidazole pH7.5, 0.2mM LiSO4, 8-11% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.86 56.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.556 α = 90 b = 60.929 β = 124.69 c = 115.656 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS 6M-F 2015-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 100 95.5 0.998 12.7 3.07 41587
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.31 71.7 0.826 1.64 1.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.23 95.1 37798 2005 96.12 0.18011 0.17754 0.1931 0.22717 0.2349 RANDOM 47.217
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.43 -2.6 8.75 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.465 r_dihedral_angle_3_deg 16.209 r_dihedral_angle_4_deg 14.897 r_long_range_B_refined 9.626 r_long_range_B_other 9.626 r_dihedral_angle_1_deg 7.371 r_scangle_other 6.711 r_mcangle_it 5.62 r_mcangle_other 5.62 r_scbond_other 4.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.465 r_dihedral_angle_3_deg 16.209 r_dihedral_angle_4_deg 14.897 r_long_range_B_refined 9.626 r_long_range_B_other 9.626 r_dihedral_angle_1_deg 7.371 r_scangle_other 6.711 r_mcangle_it 5.62 r_mcangle_other 5.62 r_scbond_other 4.424 r_scbond_it 4.422 r_mcbond_it 3.772 r_mcbond_other 3.772 r_angle_refined_deg 1.824 r_angle_other_deg 1.054 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4998 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing