X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP629320% v/v polyethylene glycol 6000, 0.1M MES pH 6.0, 0.2M sodium chloride
Crystal Properties
Matthews coefficientSolvent content
3.261.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.23α = 90
b = 137.45β = 90.12
c = 152.4γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9282DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.668.599.80.1260.1160.9937.23.5116521
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6499.70.7290.6680.2813.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1Z7H, 1FV22.668.5110753574299.760.222220.220630.25339RANDOM48.315
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.38-2.130.130.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.782
r_dihedral_angle_3_deg13.167
r_dihedral_angle_4_deg10.596
r_dihedral_angle_1_deg5.891
r_long_range_B_refined4.513
r_long_range_B_other4.508
r_mcangle_it2.891
r_mcangle_other2.891
r_scangle_other2.134
r_mcbond_it1.592
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.782
r_dihedral_angle_3_deg13.167
r_dihedral_angle_4_deg10.596
r_dihedral_angle_1_deg5.891
r_long_range_B_refined4.513
r_long_range_B_other4.508
r_mcangle_it2.891
r_mcangle_other2.891
r_scangle_other2.134
r_mcbond_it1.592
r_mcbond_other1.592
r_scbond_it1.146
r_scbond_other1.145
r_angle_refined_deg1.118
r_angle_other_deg0.856
r_chiral_restr0.065
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20842
Nucleic Acid Atoms
Solvent Atoms452
Heterogen Atoms145

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing