X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2X7Gpdb id 2X7G

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.25277.151.0 M ammonium sulfate and 0.1 M acetate pH 5.25
Crystal Properties
Matthews coefficientSolvent content
4.8774.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 188.79α = 90
b = 248.99β = 90
c = 146.73γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2010-02-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.97950DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.929.8799.30.1380.9939.55.87596963.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb id 2X7G2.929.8772124383199.140.199880.198970.21694RANDOM79.094
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.94-2.60.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.854
r_dihedral_angle_4_deg18.675
r_dihedral_angle_3_deg15.172
r_long_range_B_refined7.025
r_long_range_B_other7.025
r_dihedral_angle_1_deg5.82
r_scangle_other4.051
r_mcangle_it3.552
r_mcangle_other3.548
r_scbond_it2.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.854
r_dihedral_angle_4_deg18.675
r_dihedral_angle_3_deg15.172
r_long_range_B_refined7.025
r_long_range_B_other7.025
r_dihedral_angle_1_deg5.82
r_scangle_other4.051
r_mcangle_it3.552
r_mcangle_other3.548
r_scbond_it2.42
r_scbond_other2.42
r_mcbond_it2.096
r_mcbond_other2.096
r_angle_refined_deg1.182
r_angle_other_deg0.803
r_chiral_restr0.074
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11319
Nucleic Acid Atoms
Solvent Atoms51
Heterogen Atoms356

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing