5MW1

cryoEM structure of crenactin double helical filament at 3.8A resolution


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined59.314
r_long_range_B_other59.314
r_scangle_other52.501
r_scbond_it32.212
r_scbond_other32.211
r_mcangle_it25.741
r_mcangle_other25.74
r_dihedral_angle_2_deg22.324
r_mcbond_it16.971
r_mcbond_other16.962
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined59.314
r_long_range_B_other59.314
r_scangle_other52.501
r_scbond_it32.212
r_scbond_other32.211
r_mcangle_it25.741
r_mcangle_other25.74
r_dihedral_angle_2_deg22.324
r_mcbond_it16.971
r_mcbond_other16.962
r_dihedral_angle_3_deg9.214
r_dihedral_angle_4_deg8.729
r_dihedral_angle_1_deg6.921
r_angle_refined_deg1.453
r_angle_other_deg1.069
r_chiral_restr0.083
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
crenactin double helical filaments
Specimen Preparation
Sample Aggregation StateHELICAL ARRAY
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles470396
Reported Resolution (Å)3.8
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise25.6
Angular Rotation-161.9
Map-Model Fitting and Refinement
Id1
Refinement SpaceRECIPROCAL
Refinement ProtocolOTHER
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON II (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI POLARA 300
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION