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Glycoside Hydrolase BACCELL_00856
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 16% PEG4000, Sodium acetate 0.1M, pH 4.6
Crystal Properties Matthews coefficient Solvent content 1.9 35.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.842 α = 90 b = 68.627 β = 97.72 c = 52.88 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2016-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 68.6 98.4 12 3.3 112843
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 52.4 32663 1582 98.43 0.16905 0.16687 0.1766 0.21352 0.2209 RANDOM 16.574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3 0.18 -0.11 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.962 r_dihedral_angle_4_deg 15.725 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 7.45 r_long_range_B_refined 5.574 r_long_range_B_other 4.962 r_scangle_other 2.001 r_mcangle_other 1.713 r_mcangle_it 1.712 r_angle_refined_deg 1.434
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.962 r_dihedral_angle_4_deg 15.725 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 7.45 r_long_range_B_refined 5.574 r_long_range_B_other 4.962 r_scangle_other 2.001 r_mcangle_other 1.713 r_mcangle_it 1.712 r_angle_refined_deg 1.434 r_scbond_it 1.294 r_scbond_other 1.294 r_mcbond_it 1.058 r_mcbond_other 1.045 r_angle_other_deg 0.951 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3209 Nucleic Acid Atoms Solvent Atoms 449 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing