☰ Navigation Tabs
ACC1 Fab fragment in complex with CII583-591 (CG10)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MU0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 20% (w/v) PEG3350, 0.1 M Bistris-Propane pH 7.0, 0.2 M sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.42 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.353 α = 92.5 b = 92.844 β = 106.53 c = 121.706 γ = 104.31
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 48.9 99 0.073 11.4 3.2 73522 55.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.01 98.6 0.511 1.8 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5MU0 2.95 50.01 69880 3639 98.98 0.20442 0.2015 0.2044 0.26098 0.2624 RANDOM 77.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.49 -1.85 0.35 -1.66 1.05 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.076 r_dihedral_angle_4_deg 17.104 r_dihedral_angle_3_deg 15.699 r_dihedral_angle_1_deg 7.507 r_long_range_B_refined 2.599 r_long_range_B_other 2.599 r_mcangle_it 1.611 r_mcangle_other 1.611 r_angle_refined_deg 1.471 r_scangle_other 1.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.076 r_dihedral_angle_4_deg 17.104 r_dihedral_angle_3_deg 15.699 r_dihedral_angle_1_deg 7.507 r_long_range_B_refined 2.599 r_long_range_B_other 2.599 r_mcangle_it 1.611 r_mcangle_other 1.611 r_angle_refined_deg 1.471 r_scangle_other 1.239 r_angle_other_deg 1.004 r_mcbond_it 0.914 r_mcbond_other 0.914 r_scbond_it 0.697 r_scbond_other 0.697 r_chiral_restr 0.111 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26921 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing