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Unstructured MamC magnetite-binding protein located between two helices.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5E7U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 1.4 M tri-Sodium citrate and 0.1 M HEPES
Crystal Properties Matthews coefficient Solvent content 2.15 42.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.285 α = 90 b = 115.285 β = 90 c = 117.171 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 82.18 82.6 0.118 23.3 3 38573
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5E7U 2.1 82.18 36623 1920 82.63 0.18445 0.18216 0.191 0.22781 0.2339 RANDOM 32.307
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 2.03 -4.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.644 r_dihedral_angle_3_deg 14.047 r_dihedral_angle_4_deg 13.016 r_long_range_B_other 7.356 r_long_range_B_refined 7.347 r_dihedral_angle_1_deg 5.825 r_scangle_other 5.822 r_scbond_it 4.039 r_scbond_other 4.038 r_mcangle_it 3.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.644 r_dihedral_angle_3_deg 14.047 r_dihedral_angle_4_deg 13.016 r_long_range_B_other 7.356 r_long_range_B_refined 7.347 r_dihedral_angle_1_deg 5.825 r_scangle_other 5.822 r_scbond_it 4.039 r_scbond_other 4.038 r_mcangle_it 3.23 r_mcangle_other 3.23 r_mcbond_it 2.402 r_mcbond_other 2.401 r_angle_refined_deg 1.418 r_angle_other_deg 1.262 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5617 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement Coot model building HKL-2000 data scaling HKL-2000 data reduction