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Human p38alpha MAPK in complex with imidazolyl pyridine inhibitor 11b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 100 mM MES pH 5.6-6.2,
20-30 % PEG4000,
50 mM BOG
Crystal Properties Matthews coefficient Solvent content 2.07 40.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.5 α = 90 b = 69.39 β = 90 c = 74.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 PIXEL DECTRIS PILATUS 6M-F 2015-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 100 22.69 12.7 26280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 0.82 12.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 48.01 26280 1384 99.98 0.1953 0.19293 0.2017 0.23964 0.2444 RANDOM 26.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 0.37 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.03 r_dihedral_angle_4_deg 19.886 r_dihedral_angle_3_deg 14.918 r_long_range_B_refined 6.8 r_long_range_B_other 6.8 r_dihedral_angle_1_deg 5.883 r_scangle_other 4.932 r_mcangle_it 3.373 r_mcangle_other 3.372 r_scbond_it 3.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.03 r_dihedral_angle_4_deg 19.886 r_dihedral_angle_3_deg 14.918 r_long_range_B_refined 6.8 r_long_range_B_other 6.8 r_dihedral_angle_1_deg 5.883 r_scangle_other 4.932 r_mcangle_it 3.373 r_mcangle_other 3.372 r_scbond_it 3.274 r_scbond_other 3.273 r_mcbond_it 2.4 r_mcbond_other 2.399 r_angle_refined_deg 2.029 r_angle_other_deg 1.638 r_chiral_restr 0.132 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2623 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing