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metNgb under oxygen at 80 bar
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJ6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 1.6M AMMONIUM SULPHATE, 0.1M MES,PH6.5, 10%(V/V) DIOXANE
Crystal Properties Matthews coefficient Solvent content 2.4 48.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.819 α = 90 b = 87.819 β = 90 c = 113.522 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r BENT MIRROR 2016-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.8859 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 45.49 95.6 0.053 16 5.8 102328 17697 2 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 93.7 0.475 3.2 5.6 2592
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1OJ6 1.7 20 16853 830 94.74 0.18153 0.17888 0.1908 0.24172 0.2552 RANDOM 32.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.05 0.11 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.117 r_dihedral_angle_4_deg 16.968 r_dihedral_angle_3_deg 14.216 r_long_range_B_refined 7.352 r_long_range_B_other 7.213 r_dihedral_angle_1_deg 5.392 r_scangle_other 5.291 r_mcangle_it 4.114 r_mcangle_other 4.111 r_scbond_other 3.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.117 r_dihedral_angle_4_deg 16.968 r_dihedral_angle_3_deg 14.216 r_long_range_B_refined 7.352 r_long_range_B_other 7.213 r_dihedral_angle_1_deg 5.392 r_scangle_other 5.291 r_mcangle_it 4.114 r_mcangle_other 4.111 r_scbond_other 3.278 r_scbond_it 3.274 r_mcbond_it 2.702 r_mcbond_other 2.693 r_angle_other_deg 2.013 r_angle_refined_deg 1.779 r_chiral_restr 0.116 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1172 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing