Experiment: 5M97

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		277	0.2 M NaCl, 30% MPD and 0.1 M sodium acetate at pH4.6

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 35.38	α = 90
b = 37.91	β = 90
c = 101.64	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	PIXEL	DECTRIS PILATUS 6M-F		2016-04-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97949	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.33	35.52	100	0.0925	16.19	12.5		32150

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.33	1.378	99		1.963	0.571	1.15	10.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	AB INITIO PHASING	THROUGHOUT	1.33	35.52	32150	1570	99.61	0.195	0.1942	0.2118	RANDOM	22.3733

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.36			1.72		-1.37

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.41
r_dihedral_angle_4_deg	17.868
r_dihedral_angle_3_deg	12.771
r_dihedral_angle_1_deg	4.439
r_mcangle_it	3.869
r_angle_other_deg	3.698
r_mcbond_it	2.718
r_mcbond_other	2.571
r_angle_refined_deg	2.519
r_chiral_restr	0.158

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.41
r_dihedral_angle_4_deg	17.868
r_dihedral_angle_3_deg	12.771
r_dihedral_angle_1_deg	4.439
r_mcangle_it	3.869
r_angle_other_deg	3.698
r_mcbond_it	2.718
r_mcbond_other	2.571
r_angle_refined_deg	2.519
r_chiral_restr	0.158
r_bond_refined_d	0.032
r_gen_planes_other	0.024
r_gen_planes_refined	0.012
r_bond_other_d

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1106
Nucleic Acid Atoms
Solvent Atoms	114
Heterogen Atoms

Software

Software
Software Name	Purpose
PDB_EXTRACT	data extraction
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
Arcimboldo	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.