X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82773.2M NaCl, 0.1M HEPES/NaOHpH=8
Crystal Properties
Matthews coefficientSolvent content
4.6473.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.525α = 90
b = 71.525β = 90
c = 105.693γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944+2011-05-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E SUPERBRIGHT1.54187

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.28428.90995.60.03917.52.412468
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.312.4185.30.2074.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.3228.9091120864695.040.186210.183260.23923RANDOM43.572
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.09-0.090.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.414
r_dihedral_angle_3_deg16.151
r_dihedral_angle_4_deg11.559
r_long_range_B_refined8.29
r_dihedral_angle_1_deg5.596
r_scbond_it3.713
r_scbond_other3.709
r_mcbond_it2.848
r_mcbond_other2.846
r_angle_refined_deg1.479
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.414
r_dihedral_angle_3_deg16.151
r_dihedral_angle_4_deg11.559
r_long_range_B_refined8.29
r_dihedral_angle_1_deg5.596
r_scbond_it3.713
r_scbond_other3.709
r_mcbond_it2.848
r_mcbond_other2.846
r_angle_refined_deg1.479
r_angle_other_deg1.007
r_chiral_restr0.104
r_bond_refined_d0.011
r_bond_other_d0.002
r_gen_planes_refined0.002
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_it
r_mcangle_other
r_scangle_it
r_scangle_other
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms860
Nucleic Acid Atoms
Solvent Atoms207
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
REFMACphasing