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CRYSTAL STRUCTURE OF INTRACELLULAR B30.2 DOMAIN OF BTN3A1 BOUND TO CITRATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4N7I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 20% PEG 3350 and 0.2M Ammonium Citrate tribasic
Crystal Properties Matthews coefficient Solvent content 2.6 52.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.5 α = 90 b = 125.2 β = 90 c = 39.2 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2016-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5417
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 63 96.8 0.058 0.999 30.13 12 24696 -3 22.255
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 87 0.473 0.861 4.06
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4N7I 1.7 62.62 23457 1194 97.02 0.1824 0.181 0.1802 0.2089 0.2067 RANDOM 15.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.66 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.503 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_4_deg 10.409 r_dihedral_angle_1_deg 5.897 r_sphericity_free 4.179 r_scangle_it 3.422 r_scbond_it 2.247 r_sphericity_bonded 2.011 r_mcangle_it 1.64 r_rigid_bond_restr 1.381
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.503 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_4_deg 10.409 r_dihedral_angle_1_deg 5.897 r_sphericity_free 4.179 r_scangle_it 3.422 r_scbond_it 2.247 r_sphericity_bonded 2.011 r_mcangle_it 1.64 r_rigid_bond_restr 1.381 r_angle_refined_deg 1.309 r_mcbond_it 1.026 r_nbtor_refined 0.306 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.198 r_xyhbond_nbd_refined 0.118 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1517 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 17
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing