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Structure of the minimal RBM7 - ZCCHC8 Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LXR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291.15 0.1 M Bis-Tris-Propane
0.2 M NaBr
0.1 M Sodium malonate
20% (w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.9 57.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.771 α = 90 b = 66.575 β = 126.57 c = 111.912 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 71.79 99.8 0.061 0.995 8.1 3.2 24933
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.92 99.7 0.62
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5LXR 2.85 71.79 24232 1245 99.78 0.2618 0.294 0.3 0.3187 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.805 r_dihedral_angle_4_deg 13.952 r_dihedral_angle_3_deg 12.573 r_mcangle_it 8.09 r_mcbond_other 5.241 r_mcbond_it 5.24 r_dihedral_angle_1_deg 4.166 r_angle_other_deg 3.767 r_angle_refined_deg 1.147 r_chiral_restr 0.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.805 r_dihedral_angle_4_deg 13.952 r_dihedral_angle_3_deg 12.573 r_mcangle_it 8.09 r_mcbond_other 5.241 r_mcbond_it 5.24 r_dihedral_angle_1_deg 4.166 r_angle_other_deg 3.767 r_angle_refined_deg 1.147 r_chiral_restr 0.038 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5485 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 9
Software Software Software Name Purpose PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling REFMAC refinement PHASER phasing