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Crystal structure of DYRK2 in complex with EHT 1610 (compound 2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277.15 1.5 M Li2SO4 and 0.1 M HEPES, pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.12 60.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.24 α = 90 b = 130 β = 90.4 c = 136.33 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9200 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 47.04 97.8 0.091 9.1 3.4 35477 44.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.58 2.72 99.4 0.649 2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.58 47.04 33703 1773 97.68 0.19982 0.1971 0.203 0.25303 0.2587 RANDOM 66.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.64 0.51 -4.99 6.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.608 r_dihedral_angle_4_deg 19.344 r_dihedral_angle_3_deg 15.184 r_dihedral_angle_1_deg 6.2 r_long_range_B_refined 5.375 r_long_range_B_other 5.375 r_scangle_other 3.322 r_mcangle_it 2.987 r_mcangle_other 2.987 r_scbond_it 2.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.608 r_dihedral_angle_4_deg 19.344 r_dihedral_angle_3_deg 15.184 r_dihedral_angle_1_deg 6.2 r_long_range_B_refined 5.375 r_long_range_B_other 5.375 r_scangle_other 3.322 r_mcangle_it 2.987 r_mcangle_other 2.987 r_scbond_it 2.029 r_scbond_other 2.026 r_mcbond_it 1.832 r_mcbond_other 1.832 r_angle_refined_deg 1.179 r_angle_other_deg 0.678 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6223 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing